Domain ID e2x9rR1

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  • A: alpha arrays
  • X: HTH
  • H: HTH
  • T: tri-helical
  • F: Ribosomal_S18
UID: 000391233
Type: Automatic domain
Parent: e2uubR1
Range: R:19-88
PDB: 2x9r
PDB Description:
Hsap BLAST neighbor: Q9Y3D5
Species:

Structure of domain e2x9rR1

Domains in the same chain:

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e2x9rR1 R:19-88 HTH HTH tri-helical

Domains in the same PDB:

e2x9rC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2x9rC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2x9rE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2x9rE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2x9rF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2x9rG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2x9rH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2x9rH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2x9rJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2x9rK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2x9rL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2x9rN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2x9rO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2x9rP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2x9rR1 R:19-88 HTH HTH tri-helical
e2x9rT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e2x9rY3 Y:6-108 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e2x9rY5 Y:111-213 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e2x9rY6 Y:214-301 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e2x9rY7 Y:302-356 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like

Structural contacts of domain e2x9rR1 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2x9rF1 R:x,y,z->F:X,Y,Z Ribosomal protein S6 Interaction Interface Pymol
e2x9rK1 R:x,y,z->K:X,Y,Z Ribonuclease H-like Interaction Interface Pymol