ECOD: domain e2xdmA3

Domain ID e2xdmA3

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A: a+b three layers
X: Profilin-like
H: a+b domain in beta-lactamase/transpeptidase-like proteins
T: a+b domain in beta-lactamase/transpeptidase-like proteins
F: Peptidase_S13

UID:	000396079
Type:	Automatic domain
Parent:	e2ex2A3
Range:	A:1-44,A:354-466
Ligands:	CO SO4
PDB:	2xdm
PDB Description:	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE
UniProt:	P39045
Species:	Actinomadura sp. R39

Domains in the same chain:

e2xdmA3	A:1-44,A:354-466	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e2xdmA2	A:45-66,A:285-353	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2xdmA4	A:67-163,A:239-284	DTD-like	Inserted a+b domain in Dac-like proteins	Inserted a+b domain in Dac-like proteins
e2xdmA1	A:164-238	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins

Domains in the same PDB:

e2xdmA3	A:1-44,A:354-466	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e2xdmA2	A:45-66,A:285-353	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2xdmA4	A:67-163,A:239-284	DTD-like	Inserted a+b domain in Dac-like proteins	Inserted a+b domain in Dac-like proteins
e2xdmA1	A:164-238	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins
e2xdmB3	B:1-44,B:354-466	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e2xdmB2	B:45-66,B:285-353	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2xdmB4	B:67-163,B:239-284	DTD-like	Inserted a+b domain in Dac-like proteins	Inserted a+b domain in Dac-like proteins
e2xdmB1	B:164-238	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins
e2xdmC3	C:1-44,C:354-465	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e2xdmC2	C:45-66,C:285-353	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2xdmC4	C:67-163,C:239-284	DTD-like	Inserted a+b domain in Dac-like proteins	Inserted a+b domain in Dac-like proteins
e2xdmC1	C:164-238	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins
e2xdmD3	D:1-44,D:354-466	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e2xdmD2	D:45-66,D:285-353	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2xdmD4	D:67-163,D:239-284	DTD-like	Inserted a+b domain in Dac-like proteins	Inserted a+b domain in Dac-like proteins
e2xdmD1	D:164-238	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins

Structural contacts of domain e2xdmA3 of H-group "a+b domain in beta-lactamase/transpeptidase-like proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2xdmB1	A:x,y,z->B:X-1,Y,Z	Inserted beta sandwich domain in Dac-like proteins	Interaction Interface Pymol
e2xdmA1	A:x,y,z->A:-X,Y-1/2,-Z+1	Inserted beta sandwich domain in Dac-like proteins	Interaction Interface Pymol
e2xdmA4	A:x,y,z->A:-X,Y-1/2,-Z+1	Inserted a+b domain in Dac-like proteins	Interaction Interface Pymol
e2xdmC3	A:x,y,z->C:-X,Y-3/2,-Z	a+b domain in beta-lactamase/transpeptidase-like proteins	Interaction Interface Pymol
e2xdmB4	A:x,y,z->B:-X+1,Y-1/2,-Z+1	Inserted a+b domain in Dac-like proteins	Interaction Interface Pymol