ECOD: domain e2xdmB2

Domain ID e2xdmB2

A: alpha complex topology
X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins
H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins
T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins
F: Peptidase_S13

UID:	000396082
Type:	Automatic domain
Parent:	e2ex2A2
Range:	B:45-66,B:285-353
Ligands:	BO8 SO4
PDB:	2xdm
PDB Description:	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE
UniProt:	P39045
Species:	Actinomadura sp. R39

Domains in the same chain:

Download Pymol

e2xdmB3	B:1-44,B:354-466	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e2xdmB2	B:45-66,B:285-353	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2xdmB4	B:67-163,B:239-284	DTD-like	Inserted a+b domain in Dac-like proteins	Inserted a+b domain in Dac-like proteins
e2xdmB1	B:164-238	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins

Domains in the same PDB:

Structural contacts of domain e2xdmB2 of H-group "alpha-helical domain in beta-lactamase/transpeptidase-like proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2xdmA4	B:x,y,z->A:X,Y,Z	Inserted a+b domain in Dac-like proteins	Interaction Interface Pymol

e2xdmA3	A:1-44,A:354-466	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e2xdmA2	A:45-66,A:285-353	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2xdmA4	A:67-163,A:239-284	DTD-like	Inserted a+b domain in Dac-like proteins	Inserted a+b domain in Dac-like proteins
e2xdmA1	A:164-238	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins
e2xdmB3	B:1-44,B:354-466	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e2xdmB2	B:45-66,B:285-353	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2xdmB4	B:67-163,B:239-284	DTD-like	Inserted a+b domain in Dac-like proteins	Inserted a+b domain in Dac-like proteins
e2xdmB1	B:164-238	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins
e2xdmC3	C:1-44,C:354-465	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e2xdmC2	C:45-66,C:285-353	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2xdmC4	C:67-163,C:239-284	DTD-like	Inserted a+b domain in Dac-like proteins	Inserted a+b domain in Dac-like proteins
e2xdmC1	C:164-238	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins
e2xdmD3	D:1-44,D:354-466	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e2xdmD2	D:45-66,D:285-353	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2xdmD4	D:67-163,D:239-284	DTD-like	Inserted a+b domain in Dac-like proteins	Inserted a+b domain in Dac-like proteins
e2xdmD1	D:164-238	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins	Inserted beta sandwich domain in Dac-like proteins