Domain ID e2xgjA1

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: DEAD
UID: 001659383
Type: Manual and representative domain
Parent: e5dcaA10
Range: A:80-323
Ligands: ADP
PDB: 2xgj
PDB Description: ATP-DEPENDENT RNA HELICASE DOB1
UniProt: P47047
Hsap BLAST neighbor: P42285
Species: Saccharomyces cerevisiae

Structure of domain e2xgjA1

Domains in the same chain:

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e2xgjA1 A:80-323 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xgjA2 A:324-577 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xgjA3 A:578-608,A:874-910 HTH HTH winged
e2xgjA6 A:609-674,A:803-873 Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases
e2xgjA5 A:675-802 SH3 SH3 SH3
e2xgjA4 A:911-1073 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like

Domains in the same PDB:

e2xgjA1 A:80-323 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xgjA2 A:324-577 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xgjA3 A:578-608,A:874-910 HTH HTH winged
e2xgjA6 A:609-674,A:803-873 Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases
e2xgjA5 A:675-802 SH3 SH3 SH3
e2xgjA4 A:911-1073 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e2xgjB13 B:117-324 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xgjB1 B:324-361,B:391-579 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xgjB4 B:578-671,B:810-873 Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases
e2xgjB3 B:874-1073 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like

Structural contacts of domain e2xgjA1 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2xgjB3 A:X,Y,Z-1->B:x,y,z Sec63 N-terminal subdomain-like Interaction Interface Pymol
e2xgjA6 A:x,y,z->A:-X,Y-1/2,-Z Helical arch in Ski2-like helicases Interaction Interface Pymol
e2xgjA5 A:x,y,z->A:-X,Y-1/2,-Z SH3 Interaction Interface Pymol
e2xgjB4 A:x,y,z->B:X-1,Y,Z+1 Helical arch in Ski2-like helicases Interaction Interface Pymol
e2xgjB13 A:x,y,z->B:-X,Y-1/2,-Z P-loop domains-related Interaction Interface Pymol