Domain ID e2xgjB4

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  • A: extended segments
  • X: Helical arch in Ski2-like helicases
  • H: Helical arch in Ski2-like helicases
  • T: Helical arch in Ski2-like helicases
  • F: MTR4_beta-barrel,MTR4-like_stalk
UID: 001875141
Type: Automatic and representative domain
Parent: e2xgjA6
Range: B:578-671,B:810-873
PDB: 2xgj
PDB Description: ATP-DEPENDENT RNA HELICASE DOB1
UniProt: P47047
Hsap BLAST neighbor: P42285
Species: Saccharomyces cerevisiae

Structure of domain e2xgjB4

Domains in the same chain:

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e2xgjB13 B:117-324 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xgjB1 B:324-361,B:391-579 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xgjB4 B:578-671,B:810-873 Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases
e2xgjB3 B:874-1073 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like

Domains in the same PDB:

e2xgjA1 A:80-323 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xgjA2 A:324-577 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xgjA3 A:578-608,A:874-910 HTH HTH winged
e2xgjA6 A:609-674,A:803-873 Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases
e2xgjA5 A:675-802 SH3 SH3 SH3
e2xgjA4 A:911-1073 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e2xgjB13 B:117-324 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xgjB1 B:324-361,B:391-579 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xgjB4 B:578-671,B:810-873 Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases
e2xgjB3 B:874-1073 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like

Structural contacts of domain e2xgjB4 of H-group "Helical arch in Ski2-like helicases":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2xgjA2 B:x,y,z->A:X,Y,Z-1 P-loop domains-related Interaction Interface Pymol
e2xgjA4 B:x,y,z->A:X,Y,Z-1 Sec63 N-terminal subdomain-like Interaction Interface Pymol
e2xgjA1 B:X-1,Y,Z+1->A:x,y,z P-loop domains-related Interaction Interface Pymol
e2xgjA2 B:X-1,Y,Z+1->A:x,y,z P-loop domains-related Interaction Interface Pymol
e2xgjA5 B:x,y,z->A:-X,Y-1/2,-Z-1 SH3 Interaction Interface Pymol