Domain ID e2xhbA5

Download files:
  • A: alpha bundles
  • X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_B
UID: 001758659
Type: Automatic domain
Parent: e1tgoA3
Range: A:610-757
PDB: 2xhb
PDB Description: DNA POLYMERASE
UniProt: P56689
Hsap BLAST neighbor: P09884
Species: Thermococcus gorgonarius

Structure of domain e2xhbA5

Domains in the same chain:

Download Pymol

e2xhbA6 A:1-33,A:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2xhbA2 A:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e2xhbA1 A:133-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2xhbA4 A:348-446,A:501-609 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2xhbA3 A:447-500 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2xhbA5 A:610-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2xhbA6 A:1-33,A:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2xhbA2 A:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e2xhbA1 A:133-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2xhbA4 A:348-446,A:501-609 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2xhbA3 A:447-500 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2xhbA5 A:610-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2xhbA5 of H-group ""thumb" domain in bacteriophage RB69-like DNA polymerase I":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2xhbA1 A:-X+1/2,-Y,Z-1/2->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e2xhbA6 A:-X+1/2,-Y,Z-1/2->A:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e2xhbA5 A:x,y,z->A:-X+1,Y-1/2,-Z+1/2 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2xhbA4 A:x,y,z->A:-X+1,Y-1/2,-Z+1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2xhbA1 A:-X+1,Y-1/2,-Z+1/2->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e2xhbA5 A:-X+1,Y-1/2,-Z+1/2->A:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2xhbA2 A:-X+3/2,-Y,Z-1/2->A:x,y,z Family B DNA polymerase insertion domain Interaction Interface Pymol