Domain ID e2xjaD3

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  • A: a/b three-layered sandwiches
  • X: MurD-like peptide ligases, peptide-binding domain
  • H: MurD-like peptide ligases, peptide-binding domain
  • T: MurD-like peptide ligases, peptide-binding domain
  • F: Mur_ligase_C
UID: 000398249
Type: Automatic domain
Parent: e1e8cA2
Range: D:374-532
Ligands: ADP MG
PDB: 2xja
PDB Description: UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6- DIAMINOPIMELATE LIGASE
UniProt: P9WJL3
Species:

Structure of domain e2xjaD3

Domains in the same chain:

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e2xjaD5 D:27-141 MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like
e2xjaD4 D:142-373 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xjaD3 D:374-532 MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e2xjaA5 A:26-141 MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like
e2xjaA4 A:142-373 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xjaA3 A:374-532 MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain
e2xjaB5 B:27-141 MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like
e2xjaB4 B:142-373 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xjaB2 B:374-532 MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain
e2xjaC5 C:27-141 MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like
e2xjaC4 C:142-373 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xjaC2 C:374-532 MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain
e2xjaD5 D:27-141 MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like
e2xjaD4 D:142-373 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xjaD3 D:374-532 MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e2xjaD3 of H-group "MurD-like peptide ligases, peptide-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2xjaC4 D:x,y,z->C:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2xjaB2 D:X-1,Y-1,Z-1->B:x,y,z MurD-like peptide ligases, peptide-binding domain Interaction Interface Pymol
e2xjaD5 D:X-1,Y,Z->D:x,y,z MurF and HprK N-domain-like Interaction Interface Pymol
e2xjaB5 D:X,Y-1,Z-1->B:x,y,z MurF and HprK N-domain-like Interaction Interface Pymol
e2xjaC2 D:X,Y,Z-1->C:x,y,z MurD-like peptide ligases, peptide-binding domain Interaction Interface Pymol