Domain ID e2xqdL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 000405942
Type: Automatic domain
Parent: e2uubL1
Range: L:5-128
PDB: 2xqd
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e2xqdL1

Domains in the same chain:

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e2xqdL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e2xqdC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2xqdC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2xqdE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2xqdE3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2xqdF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2xqdG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2xqdH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2xqdH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2xqdJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2xqdK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2xqdL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2xqdN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2xqdO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2xqdP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2xqdR1 R:19-88 HTH HTH tri-helical
e2xqdT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e2xqdZ3 Z:1-212 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2xqdZ1 Z:213-312 cradle loop barrel RIFT-related Alanine racemase-C
e2xqdZ2 Z:313-405 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain

Structural contacts of domain e2xqdL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2xqdH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol