Domain ID e2xy7A3

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_A
UID: 000425214
Type: Automatic domain
Parent: e2hhvA3
Range: A:643-667,A:792-876
Ligands: SO4
PDB: 2xy7
PDB Description: DNA POLYMERASE I
UniProt: E1C9K5
Hsap BLAST neighbor: Q7Z5Q5
Species: Geobacillus stearothermophilus

Structure of domain e2xy7A3

Structural contacts of domain e2xy7A3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2xy7A4 A:x,y,z->A:-X,Y-1/2,-Z+1/2 Ribonuclease H-like Interaction Interface Pymol
e2xy7A1 A:x,y,z->A:-X,Y-1/2,-Z+1/2 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e2xy7A1 A:-X+1/2,-Y,Z-1/2->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e2xy7A2 A:-X+1/2,-Y,Z-1/2->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol