Domain ID e2xzmW5

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: RS4NT
UID: 001272157
Type: Automatic and representative domain
Range: W:2-118
Ligands: MG
PDB: 2xzm
PDB Description:
Hsap BLAST neighbor: P22090
Species:

Structure of domain e2xzmW5

Domains in the same chain:

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e2xzmW5 W:2-118 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e2xzmW4 W:119-177 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2xzmW1 W:178-260 SH3 SH3 SH3

Domains in the same PDB:

e2xzm11 1:2-68 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2xzm21 2:2-208 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2xzm31 3:2-109 Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related
e2xzm32 3:110-197 Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related
e2xzm41 4:15-116 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e2xzm42 4:117-229 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e2xzm51 5:2-99 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2xzm62 6:26-81 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2xzm71 7:2-105 HTH HTH winged
e2xzm81 8:23-115 HTH HTH winged
e2xzm91 9:72-169 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2xzmC3 C:3-103 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2xzmC4 C:95-231 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2xzmD1 D:1-179 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e2xzmF1 F:13-101 Glucose permease domain IIB-like eIF1-like eIF1-like
e2xzmG1 G:9-200 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2xzmH1 H:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2xzmH2 H:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2xzmJ1 J:14-118 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2xzmK1 K:12-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2xzmL1 L:2-142 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2xzmN1 N:3-55 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2xzmO2 O:4-84 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e2xzmO1 O:85-153 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2xzmP1 P:2-149 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2xzmR1 R:6-343 beta-propeller-like beta-propeller 7-bladed
e2xzmT1 T:6-155 HTH HTH winged
e2xzmU1 U:3-126 Bacillus chorismate mutase-like L30e-like L30e-like
e2xzmV1 V:2-122 HTH HTH FF domain
e2xzmW5 W:2-118 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e2xzmW4 W:119-177 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2xzmW1 W:178-260 SH3 SH3 SH3
e2xzmY1 Y:1-235 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like

Structural contacts of domain e2xzmW5 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2xzmP1 W:x,y,z->P:X,Y,Z Ribosomal proteins S24e, L23 and L15e Interaction Interface Pymol
e2xzmD1 W:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol