Domain ID e2y0sW4

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  • A: a+b complex topology
  • X: second helical domain in RNA-polymerase beta-prime subunit
  • H: second helical domain in RNA-polymerase beta-prime subunit
  • T: second helical domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_5,RNA_pol_Rpb1_4
UID: 001711693
Type: Automatic domain
Parent: e1twfA10
Range: W:645-879
PDB: 2y0s
PDB Description: DNA-DIRECTED RNA POLYMERASE
UniProt: B8YB53
Hsap BLAST neighbor: P24928
Species: Sulfolobus shibatae

Structure of domain e2y0sW4

Domains in the same chain:

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e2y0sW2 W:4-151,W:175-306 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e2y0sW3 W:307-494 cradle loop barrel RIFT-related double psi
e2y0sW1 W:495-644 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e2y0sW4 W:645-879 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit

Domains in the same PDB:

e2y0sA1 A:4-151,A:175-306 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e2y0sA3 A:307-494 cradle loop barrel RIFT-related double psi
e2y0sA4 A:495-644 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e2y0sA2 A:645-879 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e2y0sB6 B:8-170,B:345-475 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2y0sB1 B:171-344 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e2y0sB7 B:476-575 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e2y0sB2 B:576-715 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e2y0sB4 B:716-752,B:876-998 cradle loop barrel RIFT-related double psi
e2y0sB5 B:753-875 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e2y0sB3 B:999-1122 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2y0sC3 C:11-65 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e2y0sC2 C:66-115,C:276-395 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e2y0sC4 C:116-147,C:233-275 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2y0sC1 C:148-232 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2y0sD1 D:2-36,D:159-264 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e2y0sD2 D:37-158 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e2y0sE4 E:1-66 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e2y0sE3 E:67-170 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2y0sF1 F:3-92 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2y0sG1 G:7-116 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2y0sH1 H:9-82 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e2y0sI1 I:11-92 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e2y0sJ1 J:39-77 YqgQ-like YqgQ-like YqgQ-like
e2y0sK1 K:11-92 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e2y0sL1 L:1-91 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e2y0sM1 M:1-91 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e2y0sN1 N:1-64 HTH RPB10 RPB10
e2y0sO1 O:1-64 HTH RPB10 RPB10
e2y0sP1 P:4-48 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2y0sQ1 Q:39-77 YqgQ-like YqgQ-like YqgQ-like
e2y0sR2 R:8-170,R:345-475 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2y0sR5 R:171-344 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e2y0sR7 R:476-575 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e2y0sR6 R:576-715 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e2y0sR1 R:716-752,R:876-998 cradle loop barrel RIFT-related double psi
e2y0sR4 R:753-875 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e2y0sR3 R:999-1122 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2y0sS1 S:2-36,S:159-264 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e2y0sS2 S:37-158 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e2y0sT4 T:1-66 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e2y0sT3 T:67-170 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2y0sU1 U:3-92 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2y0sV1 V:7-116 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2y0sW2 W:4-151,W:175-306 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e2y0sW3 W:307-494 cradle loop barrel RIFT-related double psi
e2y0sW1 W:495-644 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e2y0sW4 W:645-879 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e2y0sX1 X:4-48 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2y0sY1 Y:11-65 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e2y0sY3 Y:66-115,Y:276-395 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e2y0sY4 Y:116-147,Y:233-275 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2y0sY2 Y:148-232 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2y0sZ1 Z:9-82 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit

Structural contacts of domain e2y0sW4 of H-group "second helical domain in RNA-polymerase beta-prime subunit":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2y0sR1 W:X,Y,Z->R:x,y,z RIFT-related Interaction Interface Pymol
e2y0sR6 W:X,Y,Z->R:x,y,z barrel domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e2y0sR2 W:X,Y,Z->R:x,y,z N-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e2y0sR5 W:X,Y,Z->R:x,y,z insertion domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e2y0sR3 W:X,Y,Z->R:x,y,z C-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e2y0sY1 W:X,Y,Z->Y:x,y,z third helical domain in yeast RNA-polymerase II beta-prime subunit Interaction Interface Pymol
e2y0sY3 W:X,Y,Z->Y:x,y,z central helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e2y0sV1 W:X,Y,Z->V:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e2y0sI1 W:X,Y,Z->I:x,y,z RPB6/omega subunit-like Interaction Interface Pymol
e2y0sZ1 W:X,Y,Z->Z:x,y,z RPB5-like RNA polymerase subunit Interaction Interface Pymol
e2y0sB6 W:-X,Y-1/2,-Z->B:x,y,z N-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e2y0sG1 W:X,Y,Z->G:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol