ECOD: domain e2y1oA3

Domain ID e2y1oA3

A: a/b three-layered sandwiches
X: MurD-like peptide ligases, peptide-binding domain
H: MurD-like peptide ligases, peptide-binding domain
T: MurD-like peptide ligases, peptide-binding domain
F: Mur_ligase_C

UID:	000145867
Type:	Automatic domain
Parent:	e1e8cA2
Range:	A:298-439
Ligands:	DMS SO4 T26
PDB:	2y1o
PDB Description:	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
UniProt:	P14900
Species:

Domain
In chain context
In PDB context

Structure of domain e2y1oA3

Domains in the same chain:

Download Pymol

e2y1oA1	A:1-93	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e2y1oA2	A:94-297	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2y1oA3	A:298-439	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e2y1oA1	A:1-93	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e2y1oA2	A:94-297	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2y1oA3	A:298-439	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e2y1oA3 of H-group "MurD-like peptide ligases, peptide-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2y1oA2	A:x,y,z->A:-Y,X,Z+1/4	P-loop domains-related	Interaction Interface Pymol
e2y1oA1	A:X-1,Y,Z->A:x,y,z	Rossmann-related	Interaction Interface Pymol
e2y1oA1	A:x,y,z->A:-Y+1,X+1,Z+1/4	Rossmann-related	Interaction Interface Pymol