Domain ID e2ybvE3

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: RuBisCO_large
UID: 001175255
Type: Automatic domain
Parent: e5rubA2
Range: E:149-459
Ligands: CL
PDB: 2ybv
PDB Description: RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
UniProt: Q8DIS5
Species:

Structure of domain e2ybvE3

Domains in the same chain:

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e2ybvE4 E:23-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2ybvE3 E:149-459 TIM beta/alpha-barrel TIM barrels TIM barrels

Domains in the same PDB:

e2ybvA4 A:23-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2ybvA3 A:149-459 TIM beta/alpha-barrel TIM barrels TIM barrels
e2ybvB2 B:3-106 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2ybvC4 C:23-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2ybvC3 C:149-459 TIM beta/alpha-barrel TIM barrels TIM barrels
e2ybvD2 D:3-106 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2ybvE4 E:23-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2ybvE3 E:149-459 TIM beta/alpha-barrel TIM barrels TIM barrels
e2ybvF2 F:3-106 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2ybvG4 G:23-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2ybvG3 G:149-459 TIM beta/alpha-barrel TIM barrels TIM barrels
e2ybvH2 H:3-106 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2ybvI4 I:23-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2ybvI3 I:149-459 TIM beta/alpha-barrel TIM barrels TIM barrels
e2ybvJ2 J:3-106 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2ybvK4 K:23-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2ybvK3 K:149-459 TIM beta/alpha-barrel TIM barrels TIM barrels
e2ybvL2 L:3-106 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2ybvM4 M:23-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2ybvM3 M:149-459 TIM beta/alpha-barrel TIM barrels TIM barrels
e2ybvN2 N:3-106 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2ybvO4 O:23-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2ybvO3 O:149-459 TIM beta/alpha-barrel TIM barrels TIM barrels
e2ybvP2 P:3-106 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit

Structural contacts of domain e2ybvE3 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ybvM4 E:X,Y,Z->M:x,y,z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e2ybvM3 E:X,Y,Z->M:x,y,z TIM barrels Interaction Interface Pymol
e2ybvF2 E:X,Y,Z->F:x,y,z RuBisCO, small subunit Interaction Interface Pymol
e2ybvG4 E:x,y,z->G:-X+1,Y-1/2,-Z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e2ybvD2 E:X,Y,Z->D:x,y,z RuBisCO, small subunit Interaction Interface Pymol
e2ybvG3 E:X,Y,Z->G:x,y,z TIM barrels Interaction Interface Pymol
e2ybvC4 E:x,y,z->C:X,Y,Z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e2ybvC3 E:x,y,z->C:X,Y,Z TIM barrels Interaction Interface Pymol
e2ybvO4 E:X,Y,Z->O:x,y,z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol