Domain ID e2ygcA1

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • F: Pox_Rif
UID: 000424793
Type: Automatic domain
Parent: e3samA1
Range: A:2-217
PDB: 2ygc
PDB Description: RIFAMPICIN RESISTANCE PROTEIN
UniProt: P68440
Species:

Structure of domain e2ygcA1

Domains in the same chain:

e2ygcA1 A:2-217 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2ygcA2 A:218-263,A:414-547 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2ygcA3 A:264-413 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13

Domains in the same PDB:

e2ygcA1 A:2-217 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2ygcA2 A:218-263,A:414-547 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2ygcA3 A:264-413 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13
e2ygcB1 B:2-217 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2ygcB2 B:218-263,B:414-547 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2ygcB3 B:264-413 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13
e2ygcC1 C:2-217 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2ygcC2 C:218-263,C:414-547 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2ygcC3 C:264-413 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13

Structural contacts of domain e2ygcA1 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ygcB1 A:X,Y,Z->B:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e2ygcB2 A:X,Y,Z->B:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e2ygcC2 A:X,Y,Z->C:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e2ygcC1 A:X,Y,Z->C:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e2ygcB3 A:x,y,z->B:X-Y,X,Z+1/6 Insertion domain in vaccinia virus scaffolding protein D13 Interaction Interface Pymol
e2ygcB2 A:x,y,z->B:X-Y,X,Z+1/6 Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol