Domain ID e3samA1

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • F: Pox_Rif
UID: 000185526
Type: Manual and representative domain
Range: A:1-224
Ligands: FMT
PDB: 3sam
PDB Description: Rifampicin resistance protein
UniProt: P68440
Species:

Structure of domain e3samA1

Domains in the same chain:

e3samA1 A:1-224 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3samA2 A:225-270,A:421-547 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3samA3 A:271-420 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13

Domains in the same PDB:

e3samA1 A:1-224 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3samA2 A:225-270,A:421-547 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3samA3 A:271-420 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13
e3samB1 B:-1-217 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3samB2 B:218-263,B:414-547 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3samB3 B:264-413 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13
e3samC4 C:-11-224 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3samC6 C:225-270,C:421-547 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3samC5 C:271-420 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13 Insertion domain in vaccinia virus scaffolding protein D13

Structural contacts of domain e3samA1 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3samB3 A:X,Y,Z->B:x,y,z Insertion domain in vaccinia virus scaffolding protein D13 Interaction Interface Pymol
e3samB2 A:X,Y,Z->B:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e3samB1 A:X,Y,Z->B:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e3samC6 A:X,Y,Z->C:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e3samC4 A:X,Y,Z->C:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e3samC6 A:x,y,z->C:X-Y+1,X,Z+1/6 Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e3samC5 A:x,y,z->C:X-Y+1,X,Z+1/6 Insertion domain in vaccinia virus scaffolding protein D13 Interaction Interface Pymol