Domain ID e2yicD1

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: E1_dh
UID: 000422496
Type: Automatic domain
Parent: e2bfdA1
Range: D:367-815
Ligands: MG TPP
PDB: 2yic
PDB Description: 2-OXOGLUTARATE DECARBOXYLASE
UniProt: A0R2B1
Hsap BLAST neighbor: Q02218
Species: Mycobacterium smegmatis

Structure of domain e2yicD1

Domains in the same chain:

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e2yicD1 D:367-815 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicD5 D:816-1075 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicD4 D:1076-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Domains in the same PDB:

e2yicA6 A:366-815 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicA5 A:816-1075 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicA4 A:1076-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2yicB1 B:365-814 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicB2 B:831-1090 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicB3 B:1091-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2yicC6 C:367-815 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicC5 C:816-1075 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicC4 C:1076-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2yicD1 D:367-815 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicD5 D:816-1075 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicD4 D:1076-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Structural contacts of domain e2yicD1 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2yicC5 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2yicC6 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2yicB2 D:X,Y,Z-1->B:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2yicB1 D:X,Y,Z-1->B:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2yicA6 D:X-1,Y,Z-1->A:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2yicD5 D:x,y,z->D:X,Y-1,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol