Domain ID e2yicD4

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  • A: a/b three-layered sandwiches
  • X: TK C-terminal domain-like
  • H: TK C-terminal domain-like
  • T: TK C-terminal domain-like
  • F: OxoGdeHyase_C
UID: 001306691
Type: Automatic domain
Parent: e2jgdA3
Range: D:1076-1227
PDB: 2yic
PDB Description: 2-OXOGLUTARATE DECARBOXYLASE
UniProt: A0R2B1
Hsap BLAST neighbor: Q02218
Species: Mycobacterium smegmatis

Structure of domain e2yicD4

Domains in the same chain:

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e2yicD1 D:367-815 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicD5 D:816-1075 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicD4 D:1076-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Domains in the same PDB:

e2yicA6 A:366-815 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicA5 A:816-1075 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicA4 A:1076-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2yicB1 B:365-814 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicB2 B:831-1090 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicB3 B:1091-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2yicC6 C:367-815 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicC5 C:816-1075 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicC4 C:1076-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2yicD1 D:367-815 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicD5 D:816-1075 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yicD4 D:1076-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Structural contacts of domain e2yicD4 of H-group "TK C-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2yicC4 D:x,y,z->C:X,Y,Z TK C-terminal domain-like Interaction Interface Pymol
e2yicC5 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2yicC6 D:x,y,z->C:X-1,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2yicC5 D:x,y,z->C:X-1,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol