ECOD: domain e2ykgA2

Domain ID e2ykgA2

A: beta complex topology
X: ETN0001 domain-like
H: ETN0001 domain-like
T: Mss4-like
F: RIG-I_C-RD

UID:	001813293
Type:	Automatic domain
Parent:	e3ncuA1
Range:	A:796-922
Ligands:	ZN
PDB:	2ykg
PDB Description:	PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
UniProt:	O95786
Hsap BLAST neighbor:	O95786
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e2ykgA2

Domains in the same chain:

Download Pymol

e2ykgA1	A:236-239,A:242-453	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2ykgA4	A:454-606	Helical bundle insertion in helicase domains	Helical bundle in Hef helicase	Helical bundle in Hef helicase
e2ykgA3	A:607-660,A:690-795	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2ykgA2	A:796-922	ETN0001 domain-like	ETN0001 domain-like	Mss4-like

Domains in the same PDB:

e2ykgA1	A:236-239,A:242-453	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2ykgA4	A:454-606	Helical bundle insertion in helicase domains	Helical bundle in Hef helicase	Helical bundle in Hef helicase
e2ykgA3	A:607-660,A:690-795	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2ykgA2	A:796-922	ETN0001 domain-like	ETN0001 domain-like	Mss4-like

Structural contacts of domain e2ykgA2 of H-group "ETN0001 domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ykgA4	A:-X+1,Y-1/2,-Z-1/2->A:x,y,z	Helical bundle in Hef helicase	Interaction Interface Pymol
e2ykgA4	A:-X,Y-1/2,-Z-1/2->A:x,y,z	Helical bundle in Hef helicase	Interaction Interface Pymol