Domain ID e2ykrI1

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S9
UID: 001551288
Type: Automatic domain
Parent: e4v4vAI1
Range: I:3-129
PDB: 2ykr
PDB Description: 30S RIBOSOMAL PROTEIN S9
UniProt: Q0TCN6
Hsap BLAST neighbor: P82933
Species:

Structure of domain e2ykrI1

Domains in the same chain:

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e2ykrI1 I:3-129 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e2ykrB1 B:8-118,B:143-225 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e2ykrC1 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2ykrC2 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2ykrD1 D:1-205 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e2ykrE1 E:9-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2ykrE2 E:78-158 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ykrF1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2ykrG1 G:1-151 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2ykrH1 H:1-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2ykrH2 H:66-129 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2ykrI1 I:3-129 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ykrJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2ykrK1 K:12-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2ykrL1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2ykrM1 M:1-114 HhH/H2TH H2TH H2TH
e2ykrN1 N:1-100 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2ykrO1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2ykrP1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2ykrQ1 Q:3-82 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2ykrR1 R:19-73 HTH HTH tri-helical
e2ykrS1 S:2-80 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e2ykrT1 T:2-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e2ykrW1 W:35-104 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2ykrW2 W:105-338 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e2ykrI1 of H-group "Ribosomal protein S5 domain 2-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ykrG1 I:X,Y,Z->G:x,y,z Ribosomal protein S7 Interaction Interface Pymol
e2ykrJ1 I:x,y,z->J:X,Y,Z Ribosomal protein S10 Interaction Interface Pymol
e2ykrW2 I:x,y,z->W:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2ykrN1 I:x,y,z->N:X,Y,Z LIM domain-like Interaction Interface Pymol