ECOD: domain e2ynaB1

Domain ID e2ynaB1

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: FMN-binding split barrel
F: Peptidase_C30

UID:	001113266
Type:	Automatic domain
Parent:	e2ducA2
Range:	B:1-189
Ligands:	GOL NI
PDB:	2yna
PDB Description:	3C-LIKE PROTEINASE
UniProt:	P0C6T4
Species:	Tylonycteris bat coronavirus HKU4

Domains in the same chain:

Download Pymol

e2ynaB1	B:1-189	cradle loop barrel	RIFT-related	FMN-binding split barrel
e2ynaB2	B:190-302	Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain	Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain	Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain

Domains in the same PDB:

e2ynaA1	A:1-189	cradle loop barrel	RIFT-related	FMN-binding split barrel
e2ynaA2	A:190-306	Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain	Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain	Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
e2ynaB1	B:1-189	cradle loop barrel	RIFT-related	FMN-binding split barrel
e2ynaB2	B:190-302	Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain	Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain	Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain

Structural contacts of domain e2ynaB1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ynaA2	B:x,y,z->A:X,Y,Z	Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain	Interaction Interface Pymol
e2ynaA1	B:x,y,z->A:X,Y,Z	RIFT-related	Interaction Interface Pymol
e2ynaA2	B:-X+1,-X+Y,-Z+1/3->A:x,y,z	Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain	Interaction Interface Pymol
e2ynaA2	B:-Y+1,X-Y+1,Z+1/3->A:x,y,z	Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain	Interaction Interface Pymol
e2ynaA1	B:x,y,z->A:X-1,Y,Z	RIFT-related	Interaction Interface Pymol