ECOD: domain e2ynmD1

Domain ID e2ynmD1

A: alpha arrays
X: Histone-like
H: Histone-related
T: Histone
F: PCP_red

UID:	000223818
Type:	Manual and representative domain
Range:	D:479-528
PDB:	2ynm
PDB Description:	LIGHT-INDEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE SUBUNIT B
UniProt:	Q7VD38
Species:	Prochlorococcus marinus

Domains in the same chain:

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e2ynmD2	D:1-148	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmD3	D:158-275	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmD4	D:276-451	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmD1	D:479-528	Histone-like	Histone-related	Histone

Domains in the same PDB:

e2ynmA2	A:29-295	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2ynmB1	B:28-295	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2ynmC1	C:-5-157	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmC3	C:158-268	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmC2	C:269-411	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmD2	D:1-148	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmD3	D:158-275	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmD4	D:276-451	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmD1	D:479-528	Histone-like	Histone-related	Histone

Structural contacts of domain e2ynmD1 of H-group "Histone-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ynmD1	D:x,y,z->C:-X,Y,-Z-1	Histone-related	Interaction Interface Pymol
e2ynmD1	D:x,y,z->D:-X,Y,-Z	Histone-related	Interaction Interface Pymol
e2ynmD1	D:-X,Y,-Z->D:x,y,z	Histone-related	Interaction Interface Pymol
e2ynmD1	D:x,y,z->D:X,Y-1,Z	Histone-related	Interaction Interface Pymol