ECOD: domain e2ynmB1

Domain ID e2ynmB1

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: Fer4_NifH

UID:	000222318
Type:	Automatic domain
Parent:	e2afhE1
Range:	B:28-295
Ligands:	ADP AF3 EPE GOL MG SF4
PDB:	2ynm
PDB Description:	LIGHT-INDEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE IRON-SULFUR ATP-BINDING PROTEIN
UniProt:	Q7VD39
Species:	Prochlorococcus marinus

Domain
In chain context
In PDB context

Structure of domain e2ynmB1

Domains in the same chain:

Download Pymol

e2ynmB1	B:28-295	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e2ynmA2	A:29-295	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2ynmB1	B:28-295	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2ynmC1	C:-5-157	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmC3	C:158-268	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmC2	C:269-411	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmD2	D:1-148	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmD3	D:158-275	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmD4	D:276-451	Flavodoxin-like	Class I glutamine amidotransferase-like	Chelatase-like
e2ynmD1	D:479-528	Histone-like	Histone-related	Histone

Structural contacts of domain e2ynmB1 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ynmA2	B:x,y,z->A:X,Y,Z	P-loop domains-related	Interaction Interface Pymol
e2ynmA2	B:X,Y,Z->C:x,y,z	P-loop domains-related	Interaction Interface Pymol
e2ynmA2	B:x,y,z->A:-X+1/2,Y-1/2,-Z	P-loop domains-related	Interaction Interface Pymol
e2ynmA2	B:X,Y,Z->D:x,y,z	P-loop domains-related	Interaction Interface Pymol
e2ynmA2	B:X,Y,Z-1->C:x,y,z	P-loop domains-related	Interaction Interface Pymol