Domain ID e2ypnA2

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: Porphobil_deam
UID: 001523316
Type: Automatic domain
Parent: e1pdaA4
Range: A:3-102,A:199-219
Ligands: DPM
PDB: 2ypn
PDB Description: PROTEIN (HYDROXYMETHYLBILANE SYNTHASE)
UniProt: P06983
Hsap BLAST neighbor: P08397
Species: Escherichia coli

Structure of domain e2ypnA2

Structural contacts of domain e2ypnA2 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ypnA2 A:x,y,z->A:-X,-Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e2ypnA1 A:x,y,z->A:-X,-Y,Z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol
e2ypnA2 A:-X,-Y,Z->A:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e2ypnA1 A:-X,-Y,Z->A:x,y,z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol
e2ypnA1 A:-X+1/2,Y-1/2,-Z+1->A:x,y,z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol
e2ypnA3 A:-X+1/2,Y-1/2,-Z+1->A:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e2ypnA1 A:-X+1/2,Y-1/2,-Z->A:x,y,z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol