Domain ID e2yu9F1

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  • A: alpha arrays
  • X: RPB6/omega subunit-like
  • H: RPB6/omega subunit-like
  • T: RPB6
  • F: RNA_pol_Rpb6
UID: 000047472
Type: Automatic domain
Parent: e1qklA1
Range: F:72-155
PDB: 2yu9
PDB Description: DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide
UniProt: P20435
Hsap BLAST neighbor: P61218
Species: Saccharomyces cerevisiae

Structure of domain e2yu9F1

Domains in the same chain:

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e2yu9F1 F:72-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6

Domains in the same PDB:

e2yu9A6 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e2yu9A5 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e2yu9A1 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e2yu9A9 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e2yu9A7 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e2yu9A2 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e2yu9A3 A:1060-1102,A:1301-1450 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e2yu9A4 A:1103-1131,A:1243-1300 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2yu9A8 A:1132-1242 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2yu9B7 B:20-138,B:164-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2yu9B6 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e2yu9B3 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e2yu9B4 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e2yu9B5 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e2yu9B2 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e2yu9B1 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2yu9C1 C:3-37,C:173-268 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e2yu9C2 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e2yu9E2 E:5-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e2yu9E1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e2yu9F1 F:72-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e2yu9H1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2yu9I1 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2yu9I2 I:50-120 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2yu9J1 J:1-65 HTH RPB10 RPB10
e2yu9K1 K:1-114 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e2yu9L1 L:25-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e2yu9F1 of H-group "RPB6/omega subunit-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2yu9A5 F:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e2yu9A7 F:x,y,z->A:X,Y,Z second helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e2yu9A1 F:x,y,z->A:X,Y,Z MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase Interaction Interface Pymol
e2yu9A3 F:x,y,z->A:X,Y,Z central helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e2yu9A2 F:x,y,z->A:X,Y,Z third helical domain in yeast RNA-polymerase II beta-prime subunit Interaction Interface Pymol
e2yu9E1 F:x,y,z->E:X,Y,Z RPB5-like RNA polymerase subunit Interaction Interface Pymol
e2yu9B1 F:x,y,z->B:X,Y,Z C-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol