Domain ID e2ywbB2

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Class I glutamine amidotransferase-like
  • T: Class I glutamine amidotransferase-like
  • F: GATase
UID: 000330162
Type: Automatic domain
Parent: e1gpmA3
Range: B:1-191
PDB: 2ywb
PDB Description: GMP synthase [glutamine-hydrolyzing]
UniProt: Q5SI28
Hsap BLAST neighbor: P49915
Species:

Structure of domain e2ywbB2

Domains in the same chain:

Download Pymol

e2ywbB2 B:1-191 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e2ywbB1 B:189-322,B:347-382 HUP domain-like HUP domains HUP domains
e2ywbB3 B:383-503 Alpha-lytic protease prodomain-like GMP synthetase C-terminal dimerisation domain GMP synthetase C-terminal dimerisation domain

Domains in the same PDB:

e2ywbA1 A:1-188 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e2ywbA2 A:189-382 HUP domain-like HUP domains HUP domains
e2ywbA3 A:383-503 Alpha-lytic protease prodomain-like GMP synthetase C-terminal dimerisation domain GMP synthetase C-terminal dimerisation domain
e2ywbB2 B:1-191 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e2ywbB1 B:189-322,B:347-382 HUP domain-like HUP domains HUP domains
e2ywbB3 B:383-503 Alpha-lytic protease prodomain-like GMP synthetase C-terminal dimerisation domain GMP synthetase C-terminal dimerisation domain
e2ywbC3 C:1-188 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e2ywbC1 C:189-325,C:347-382 HUP domain-like HUP domains HUP domains
e2ywbC2 C:383-503 Alpha-lytic protease prodomain-like GMP synthetase C-terminal dimerisation domain GMP synthetase C-terminal dimerisation domain
e2ywbD3 D:1-188 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e2ywbD1 D:189-322,D:346-382 HUP domain-like HUP domains HUP domains
e2ywbD2 D:383-503 Alpha-lytic protease prodomain-like GMP synthetase C-terminal dimerisation domain GMP synthetase C-terminal dimerisation domain

Structural contacts of domain e2ywbB2 of H-group "Class I glutamine amidotransferase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ywbD2 B:X,Y,Z->D:x,y,z GMP synthetase C-terminal dimerisation domain Interaction Interface Pymol
e2ywbD1 B:X,Y,Z->D:x,y,z HUP domains Interaction Interface Pymol
e2ywbD1 B:-X-1/2,Y-1/2,-Z->D:x,y,z HUP domains Interaction Interface Pymol
e2ywbD3 B:x,y,z->D:X-1/2,Y+1/2,Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e2ywbB2 B:x,y,z->B:-X-1,Y,-Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e2ywbB2 B:-X-1,Y,-Z->B:x,y,z Class I glutamine amidotransferase-like Interaction Interface Pymol