ECOD: domain e2yy5D1

Domain ID e2yy5D1

A: a/b three-layered sandwiches
X: HUP domain-like
H: HUP domains
T: HUP domains
F: tRNA-synt_1b

UID:	000341079
Type:	Automatic domain
Parent:	e1i6lA1
Range:	D:1-346
Ligands:	SO4 WSA
PDB:	2yy5
PDB Description:	Tryptophanyl-tRNA synthetase
UniProt:	P75510
Hsap BLAST neighbor:	Q9UGM6
Species:

Domains in the same chain:

Download Pymol

e2yy5D1	D:1-346	HUP domain-like	HUP domains	HUP domains

Domains in the same PDB:

e2yy5A1	A:2-346	HUP domain-like	HUP domains	HUP domains
e2yy5B1	B:1-346	HUP domain-like	HUP domains	HUP domains
e2yy5C1	C:2-346	HUP domain-like	HUP domains	HUP domains
e2yy5D1	D:1-346	HUP domain-like	HUP domains	HUP domains

Structural contacts of domain e2yy5D1 of H-group "HUP domains":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2yy5C1	D:x,y,z->C:X,Y,Z	HUP domains	Interaction Interface Pymol
e2yy5D1	D:x,y,z->D:-X+1,Y,-Z+2	HUP domains	Interaction Interface Pymol
e2yy5D1	D:-X+1,Y,-Z+2->D:x,y,z	HUP domains	Interaction Interface Pymol
e2yy5C1	D:x,y,z->C:-X,Y,-Z+2	HUP domains	Interaction Interface Pymol
e2yy5D1	D:x,y,z->D:X,Y-1,Z	HUP domains	Interaction Interface Pymol
e2yy5D1	D:X,Y-1,Z->D:x,y,z	HUP domains	Interaction Interface Pymol
e2yy5C1	D:x,y,z->C:-X,Y-1,-Z+2	HUP domains	Interaction Interface Pymol
e2yy5C1	D:x,y,z->C:-X+1,Y-1,-Z+2	HUP domains	Interaction Interface Pymol
e2yy5C1	D:x,y,z->C:X,Y-1,Z	HUP domains	Interaction Interface Pymol
e2yy5C1	D:X,Y-1,Z->C:x,y,z	HUP domains	Interaction Interface Pymol