Domain ID e2zbkA3

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  • A: a/b three-layered sandwiches
  • X: HAD domain-like
  • H: HAD domain-related
  • T: Toprim domain
  • F: TOP6A-Spo11_Toprim
UID: 001806469
Type: Manual and representative domain
Range: A:202-389
PDB: 2zbk
PDB Description: TYPE II DNA TOPOISOMERASE VI SUBUNIT A
UniProt: O05208
Hsap BLAST neighbor: Q9Y5K1
Species: Sulfolobus shibatae

Structure of domain e2zbkA3

Domains in the same chain:

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e2zbkA1 A:10-158 HTH HTH domain in DNA topoisomerase IV alpha subunit HTH domain in DNA topoisomerase IV alpha subunit
e2zbkA2 A:159-201 all-beta domain in DNA topoisomerase IV alpha subunit all-beta domain in DNA topoisomerase IV alpha subunit all-beta domain in DNA topoisomerase IV alpha subunit
e2zbkA3 A:202-389 HAD domain-like HAD domain-related Toprim domain

Domains in the same PDB:

e2zbkA1 A:10-158 HTH HTH domain in DNA topoisomerase IV alpha subunit HTH domain in DNA topoisomerase IV alpha subunit
e2zbkA2 A:159-201 all-beta domain in DNA topoisomerase IV alpha subunit all-beta domain in DNA topoisomerase IV alpha subunit all-beta domain in DNA topoisomerase IV alpha subunit
e2zbkA3 A:202-389 HAD domain-like HAD domain-related Toprim domain
e2zbkB3 B:14-228 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e2zbkB2 B:229-306 HhH/H2TH H2TH H2TH
e2zbkB1 B:307-519 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2zbkC2 C:10-44,C:69-158 HTH HTH domain in DNA topoisomerase IV alpha subunit HTH domain in DNA topoisomerase IV alpha subunit
e2zbkC1 C:159-389 HAD domain-like HAD domain-related Toprim domain
e2zbkD1 D:14-228 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e2zbkD3 D:229-306 HhH/H2TH H2TH H2TH
e2zbkD2 D:307-519 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2zbkE2 E:10-44,E:66-158 HTH HTH domain in DNA topoisomerase IV alpha subunit HTH domain in DNA topoisomerase IV alpha subunit
e2zbkE1 E:159-389 HAD domain-like HAD domain-related Toprim domain
e2zbkF2 F:14-228 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e2zbkF1 F:229-306 HhH/H2TH H2TH H2TH
e2zbkF3 F:307-519 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2zbkG2 G:10-44,G:66-158 HTH HTH domain in DNA topoisomerase IV alpha subunit HTH domain in DNA topoisomerase IV alpha subunit
e2zbkG1 G:159-389 HAD domain-like HAD domain-related Toprim domain
e2zbkH2 H:14-228 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e2zbkH1 H:229-306 HhH/H2TH H2TH H2TH
e2zbkH3 H:307-519 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Structural contacts of domain e2zbkA3 of H-group "HAD domain-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2zbkC2 A:X,Y,Z->C:x,y,z HTH domain in DNA topoisomerase IV alpha subunit Interaction Interface Pymol
e2zbkC1 A:X,Y,Z->C:x,y,z HAD domain-related Interaction Interface Pymol
e2zbkG1 A:-X+1/2,-Y,Z-1/2->G:x,y,z HAD domain-related Interaction Interface Pymol