Domain ID e2zbkD2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Topo-VIb_trans
UID: 001814542
Type: Automatic domain
Parent: e2hkjA2
Range: D:307-519
PDB: 2zbk
PDB Description: TYPE 2 DNA TOPOISOMERASE 6 SUBUNIT B
UniProt: O05207
Species: Sulfolobus shibatae

Structure of domain e2zbkD2

Domains in the same chain:

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e2zbkD1 D:14-228 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e2zbkD3 D:229-306 HhH/H2TH H2TH H2TH
e2zbkD2 D:307-519 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e2zbkA1 A:10-158 HTH HTH domain in DNA topoisomerase IV alpha subunit HTH domain in DNA topoisomerase IV alpha subunit
e2zbkA2 A:159-201 all-beta domain in DNA topoisomerase IV alpha subunit all-beta domain in DNA topoisomerase IV alpha subunit all-beta domain in DNA topoisomerase IV alpha subunit
e2zbkA3 A:202-389 HAD domain-like HAD domain-related Toprim domain
e2zbkB3 B:14-228 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e2zbkB2 B:229-306 HhH/H2TH H2TH H2TH
e2zbkB1 B:307-519 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2zbkC2 C:10-44,C:69-158 HTH HTH domain in DNA topoisomerase IV alpha subunit HTH domain in DNA topoisomerase IV alpha subunit
e2zbkC1 C:159-389 HAD domain-like HAD domain-related Toprim domain
e2zbkD1 D:14-228 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e2zbkD3 D:229-306 HhH/H2TH H2TH H2TH
e2zbkD2 D:307-519 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2zbkE2 E:10-44,E:66-158 HTH HTH domain in DNA topoisomerase IV alpha subunit HTH domain in DNA topoisomerase IV alpha subunit
e2zbkE1 E:159-389 HAD domain-like HAD domain-related Toprim domain
e2zbkF2 F:14-228 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e2zbkF1 F:229-306 HhH/H2TH H2TH H2TH
e2zbkF3 F:307-519 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2zbkG2 G:10-44,G:66-158 HTH HTH domain in DNA topoisomerase IV alpha subunit HTH domain in DNA topoisomerase IV alpha subunit
e2zbkG1 G:159-389 HAD domain-like HAD domain-related Toprim domain
e2zbkH2 H:14-228 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e2zbkH1 H:229-306 HhH/H2TH H2TH H2TH
e2zbkH3 H:307-519 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Structural contacts of domain e2zbkD2 of H-group "Ribosomal protein S5 domain 2-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2zbkC2 D:x,y,z->C:X,Y,Z HTH domain in DNA topoisomerase IV alpha subunit Interaction Interface Pymol
e2zbkB2 D:X-1/2,-Y+1/2,-Z->B:x,y,z H2TH Interaction Interface Pymol
e2zbkF3 D:-X+1/2,-Y,Z-1/2->F:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2zbkH3 D:x,y,z->H:X-1/2,-Y-1/2,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol