Domain ID e2zjpY1

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L32p
UID: 000088925
Type: Automatic domain
Parent: e2j0151
Range: Y:2-59
Ligands: ZN
PDB: 2zjp
PDB Description: 50S RIBOSOMAL PROTEIN L32
UniProt: P49228
Species: Deinococcus radiodurans

Structure of domain e2zjpY1

Domains in the same chain:

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e2zjpY1 Y:2-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e2zjp11 1:5-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2zjp21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e2zjp31 3:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e2zjp41 4:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e2zjpA1 A:61-127 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2zjpA2 A:128-272 SH3 SH3 SH3
e2zjpB1 B:1-205 cradle loop barrel RIFT-related Alanine racemase-C
e2zjpC1 C:2-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2zjpD1 D:3-179 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2zjpE1 E:8-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2zjpE2 E:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2zjpF2 F:1-70 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e2zjpF1 F:72-137 HTH HTH Ribosomal protein L11, C-terminal domain
e2zjpG1 G:30-166 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2zjpH1 H:1-134 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2zjpI1 I:4-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e2zjpJ1 J:6-141 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e2zjpK1 K:14-115 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e2zjpL1 L:8-111 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2zjpM1 M:2-109 SH3 SH3 SH3
e2zjpN1 N:3-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e2zjpO1 O:5-98 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e2zjpP1 P:22-134 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2zjpQ1 Q:2-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2zjpR2 R:4-113 SH3 SH3 SH3
e2zjpS1 S:1-88 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2zjpS2 S:89-175 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e2zjpT1 T:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2zjpU1 U:8-79 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e2zjpV1 V:1-66 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2zjpW1 W:1-55 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2zjpY1 Y:2-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e2zjpY1 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2zjpP1 Y:x,y,z->P:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol
e2zjpK1 Y:x,y,z->K:X,Y,Z Prokaryotic ribosomal protein L17 Interaction Interface Pymol
e2zjpK1 Y:x,y,z->M:X-1/2,-Y+1/2,-Z+1/2 Prokaryotic ribosomal protein L17 Interaction Interface Pymol
e2zjpH1 Y:x,y,z->H:X-1/2,-Y+1/2,-Z+1/2 Ribosomal protein L14-related Interaction Interface Pymol