Domain ID e2zjqC1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000109920
Type: Automatic domain
Parent: e1dmgA1
Range: C:2-198
PDB: 2zjq
PDB Description: 50S RIBOSOMAL PROTEIN L4
UniProt: Q9RXK1
Hsap BLAST neighbor: Q9BYD3
Species: Deinococcus radiodurans

Structure of domain e2zjqC1

Domains in the same chain:

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e2zjqC1 C:2-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e2zjq11 1:5-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2zjq21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e2zjq31 3:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e2zjq41 4:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e2zjq51 5:56-122 ClpS-like ClpS-related ClpS-related
e2zjqA1 A:61-127 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2zjqA2 A:128-272 SH3 SH3 SH3
e2zjqB1 B:1-205 cradle loop barrel RIFT-related Alanine racemase-C
e2zjqC1 C:2-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2zjqD1 D:3-179 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2zjqE1 E:8-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2zjqE2 E:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2zjqF3 F:1-71 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e2zjqF4 F:72-144 HTH HTH Ribosomal protein L11, C-terminal domain
e2zjqG1 G:30-166 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2zjqH1 H:1-134 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2zjqI1 I:4-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e2zjqJ1 J:6-141 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e2zjqK1 K:14-115 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e2zjqL1 L:8-111 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2zjqM1 M:2-109 SH3 SH3 SH3
e2zjqN1 N:3-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e2zjqO1 O:5-98 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e2zjqP1 P:22-134 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2zjqQ1 Q:2-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2zjqR2 R:4-113 SH3 SH3 SH3
e2zjqS1 S:1-88 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2zjqS2 S:89-175 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e2zjqT1 T:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2zjqU1 U:8-79 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e2zjqV1 V:1-66 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2zjqW1 W:1-55 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2zjqZ1 Z:2-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e2zjqC1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 C:X,Y,Z->I:x,y,z Ribosomal protein L4 Interaction Interface Pymol