Domain ID e2zjrS3

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  • A: a+b complex topology
  • X: Ribosomal protein TL5/L25 C-terminal domain-like
  • H: Ribosomal protein TL5/L25 C-terminal domain-related
  • T: Ribosomal protein TL5/L25 C-terminal domain-related
  • F: Ribosomal_TL5_C
UID: 001108023
Type: Manual and representative domain
Range: S:89-175
PDB: 2zjr
PDB Description: 50S RIBOSOMAL PROTEIN L25
UniProt: Q9RX88
Species: Deinococcus radiodurans

Structure of domain e2zjrS3

Domains in the same chain:

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e2zjrS2 S:1-88 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2zjrS3 S:89-175 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Domains in the same PDB:

e2zjr11 1:5-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2zjr21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e2zjr31 3:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e2zjr41 4:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e2zjrA1 A:61-127 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2zjrA2 A:128-272 SH3 SH3 SH3
e2zjrB1 B:1-205 cradle loop barrel RIFT-related Alanine racemase-C
e2zjrC1 C:2-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2zjrD1 D:3-179 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2zjrE1 E:8-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2zjrE2 E:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2zjrF1 F:74-144 HTH HTH Ribosomal protein L11, C-terminal domain
e2zjrG1 G:30-166 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2zjrH1 H:1-134 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2zjrI1 I:4-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e2zjrJ1 J:6-141 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e2zjrK1 K:14-115 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e2zjrL1 L:8-111 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2zjrM1 M:2-109 SH3 SH3 SH3
e2zjrN1 N:3-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e2zjrO1 O:5-98 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e2zjrP1 P:22-134 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2zjrQ1 Q:2-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2zjrR2 R:4-113 SH3 SH3 SH3
e2zjrS2 S:1-88 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2zjrS3 S:89-175 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e2zjrT1 T:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2zjrU1 U:8-79 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e2zjrV1 V:1-66 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2zjrW1 W:1-55 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2zjrZ1 Z:2-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e2zjrS3 of H-group "Ribosomal protein TL5/L25 C-terminal domain-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2zjrS3 S:x,y,z->J:X,Y,Z Ribosomal protein TL5/L25 C-terminal domain-related Interaction Interface Pymol
e2zjrF1 S:x,y,z->F:X,Y,Z HTH Interaction Interface Pymol