Domain ID e2zkrc1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000341487
Type: Automatic domain
Parent: e1dmgA1
Range: c:6-262
PDB: 2zkr
PDB Description:
Hsap BLAST neighbor: P36578
Species:

Structure of domain e2zkrc1

Domains in the same chain:

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e2zkrc1 c:6-262 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e2zkr21 2:3-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2zkr31 3:3-50 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e2zkr41 4:3-93 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2zkr51 5:1-50,5:147-210 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e2zkr52 5:51-146 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e2zkr61 6:2-114 Bacillus chorismate mutase-like L30e-like L30e-like
e2zkra6 a:2-98 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2zkra5 a:99-246 SH3 SH3 SH3
e2zkrb1 b:6-350 cradle loop barrel RIFT-related Alanine racemase-C
e2zkrc1 c:6-262 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2zkrd1 d:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2zkre3 e:10-87 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2zkre4 e:88-184 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2zkrf1 f:104-223 Bacillus chorismate mutase-like L30e-like L30e-like
e2zkrh1 h:3-168 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e2zkri1 i:71-144 HTH HTH Ribosomal protein L11, C-terminal domain
e2zkrj1 j:6-141 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2zkrk1 k:16-139 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2zkrm1 m:3-177 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2zkrn2 n:10-122,n:142-246 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2zkro1 o:19-139 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e2zkrp3 p:9-57 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e2zkrp2 p:57-191 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e2zkrq2 q:3-98 SH3 SH3 SH3
e2zkrr1 r:2-153 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2zkrs1 s:76-153 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2zkrt2 t:8-121 SH3 SH3 SH3
e2zkru1 u:7-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2zkrv1 v:4-64 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2zkrw1 w:111-270 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2zkrx1 x:22-101 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e2zkr.1 y:5-67,9:68-125 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e2zkrz1 z:11-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e2zkrc1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2zkro1 c:x,y,z->o:X,Y,Z Ribosomal proteins L15p and L18e Interaction Interface Pymol
e2zkrt2 c:x,y,z->t:X,Y,Z SH3 Interaction Interface Pymol