Domain ID e2zm6D1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001551292
Type: Automatic domain
Parent: e4v4vAD1
Range: D:2-209
Ligands: ZN
PDB: 2zm6
PDB Description: 30S ribosomal protein S4
UniProt: P80373
Species: Thermus thermophilus

Structure of domain e2zm6D1

Domains in the same chain:

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e2zm6D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e2zm6B1 B:7-127,B:157-228 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e2zm6C2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2zm6C1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2zm6D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e2zm6E4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2zm6E3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2zm6F1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2zm6G1 G:2-154 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2zm6H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2zm6H2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2zm6I1 I:4-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2zm6J1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2zm6K1 K:11-125 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2zm6L1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2zm6M1 M:2-121 HhH/H2TH H2TH H2TH
e2zm6N1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2zm6O1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2zm6P1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2zm6Q1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2zm6R1 R:21-88 HTH HTH tri-helical
e2zm6S1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e2zm6T1 T:8-101 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e2zm6D1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2zm6E4 D:X,Y,Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol
e2zm6E3 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2zm6H1 D:Y,X,-Z+1->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e2zm6E3 D:Y,X,-Z+1->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2zm6B1 D:x,y,z->B:Y,X,-Z+1 Ribosomal protein S2/SIS domain Interaction Interface Pymol
e2zm6C1 D:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol