Domain ID e2zxiB4

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  • A: alpha arrays
  • X: HhH/H2TH
  • H: SAM/DNA-glycosylase
  • T: SAM domain-like
  • F: GIDA_C
UID: 001388430
Type: Automatic domain
Parent: e2zxiA4
Range: B:538-615
PDB: 2zxi
PDB Description: TRNA URIDINE 5-CARBOXYMETHYLAMINOMETHYL MODIFICATION ENZYME MNMG
UniProt: O66962
Hsap BLAST neighbor: Q9Y2Z2
Species: Aquifex aeolicus

Structure of domain e2zxiB4

Domains in the same chain:

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e2zxiB1 B:-1-199,B:336-450 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2zxiB3 B:200-335 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e2zxiB2 B:451-537 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA
e2zxiB4 B:538-615 HhH/H2TH SAM/DNA-glycosylase SAM domain-like

Domains in the same PDB:

e2zxiA1 A:1-199,A:351-465 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2zxiA2 A:200-350 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e2zxiA3 A:466-552 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA
e2zxiA4 A:553-615 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2zxiB1 B:-1-199,B:336-450 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2zxiB3 B:200-335 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e2zxiB2 B:451-537 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA
e2zxiB4 B:538-615 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2zxiC2 C:-1-199,C:336-450 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2zxiC9 C:200-335 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e2zxiC10 C:451-537 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA
e2zxiC7 C:538-615 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2zxiD9 D:-1-199,D:336-450 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2zxiD10 D:200-335 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e2zxiD11 D:451-537 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA
e2zxiD8 D:538-615 HhH/H2TH SAM/DNA-glycosylase SAM domain-like

Structural contacts of domain e2zxiB4 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2zxiB4 B:x,y,z->B:-X-1,Y-1/2,-Z SAM/DNA-glycosylase Interaction Interface Pymol
e2zxiB2 B:x,y,z->B:-X-1,Y-1/2,-Z C-terminal helical domain in tRNA modifying enzyme GidA Interaction Interface Pymol
e2zxiB4 B:-X-1,Y-1/2,-Z->B:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol
e2zxiA2 B:-X-1,Y-1/2,-Z->A:x,y,z FAD-linked reductases-C Interaction Interface Pymol
e2zxiC7 B:X,Y,Z->C:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol
e2zxiA4 B:x,y,z->A:X-1,Y,Z SAM/DNA-glycosylase Interaction Interface Pymol