ECOD: domain e3ayhB1

Domain ID e3ayhB1

A: a+b two layers
X: Dodecin subunit-like
H: Flavin-binding protein dodecin-like
T: Flavin-binding protein dodecin-like
F: SHS2_Rpb7-N

UID:	000143841
Type:	Automatic domain
Parent:	e1go3E2
Range:	B:1-78
Ligands:	SO4
PDB:	3ayh
PDB Description:	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8
UniProt:	O94285
Hsap BLAST neighbor:	Q9Y535
Species:

Domain
In chain context
In PDB context

Structure of domain e3ayhB1

Domains in the same chain:

Download Pymol

e3ayhB1	B:1-78	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e3ayhB3	B:79-161,B:182-203	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Domains in the same PDB:

e3ayhA1	A:-4-129	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3ayhB1	B:1-78	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e3ayhB3	B:79-161,B:182-203	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Structural contacts of domain e3ayhB1 of H-group "Flavin-binding protein dodecin-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3ayhA1	B:x,y,z->A:X,Y,Z	SAM/DNA-glycosylase	Interaction Interface Pymol
e3ayhB1	B:x,y,z->B:X-Y,-Y,-Z+1/3	Flavin-binding protein dodecin-like	Interaction Interface Pymol
e3ayhB1	B:X-Y,-Y,-Z+1/3->B:x,y,z	Flavin-binding protein dodecin-like	Interaction Interface Pymol
e3ayhA1	B:x,y,z->A:Y,X,-Z	SAM/DNA-glycosylase	Interaction Interface Pymol
e3ayhB1	B:x,y,z->B:Y,X,-Z	Flavin-binding protein dodecin-like	Interaction Interface Pymol
e3ayhB1	B:Y,X,-Z->B:x,y,z	Flavin-binding protein dodecin-like	Interaction Interface Pymol