Domain ID e3ayxC3

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  • A: a+b two layers
  • X: FAD-linked reductases, C-terminal domain-like
  • H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • F: NiFeSe_Hases
UID: 000430747
Type: Automatic domain
Parent: e1ublL5
Range: C:2-54,C:556-596
Ligands: CMO CYN FE2 MG NI O
PDB: 3ayx
PDB Description: MEMBRANE-BOUND HYDROGENASE LARGE SUBUNIT
UniProt: F2Z6J6
Species: Hydrogenovibrio marinus

Structure of domain e3ayxC3

Domains in the same chain:

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e3ayxC3 C:2-54,C:556-596 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayxC4 C:55-98,C:503-555 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayxC2 C:97-335,C:406-502 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3ayxC1 C:336-406 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Domains in the same PDB:

e3ayxA4 A:2-54,A:556-596 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayxA3 A:55-98,A:503-555 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayxA1 A:97-335,A:406-502 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3ayxA2 A:336-406 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e3ayxB2 B:11-191 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3ayxB1 B:192-283 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3ayxC3 C:2-54,C:556-596 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayxC4 C:55-98,C:503-555 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayxC2 C:97-335,C:406-502 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3ayxC1 C:336-406 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e3ayxD2 D:11-191 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3ayxD1 D:192-277 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Structural contacts of domain e3ayxC3 of H-group "Ni-Fe binding domain in nickel-iron hydrogenase large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ayxD2 C:X,Y,Z->D:x,y,z Class I glutamine amidotransferase-like Interaction Interface Pymol