Domain ID e3ayxD1

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  • A: few secondary structure elements
  • X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
  • H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
  • T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
  • F: NiFe_hyd_SSU_C
UID: 000430751
Type: Automatic domain
Parent: e1ublS1
Range: D:192-277
Ligands: F3S GOL SF4
PDB: 3ayx
PDB Description: MEMBRANE-BOUND HYDROGENASE SMALL SUBUNIT
UniProt: F2Z6J5
Species: Hydrogenovibrio marinus

Structure of domain e3ayxD1

Domains in the same chain:

e3ayxD2 D:11-191 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3ayxD1 D:192-277 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Domains in the same PDB:

e3ayxA4 A:2-54,A:556-596 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayxA3 A:55-98,A:503-555 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayxA1 A:97-335,A:406-502 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3ayxA2 A:336-406 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e3ayxB2 B:11-191 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3ayxB1 B:192-283 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3ayxC3 C:2-54,C:556-596 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayxC4 C:55-98,C:503-555 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayxC2 C:97-335,C:406-502 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3ayxC1 C:336-406 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e3ayxD2 D:11-191 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3ayxD1 D:192-277 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Structural contacts of domain e3ayxD1 of H-group "Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ayxC2 D:x,y,z->C:X,Y,Z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e3ayxC4 D:x,y,z->C:X,Y,Z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3ayxA1 D:x,y,z->A:X,Y,Z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e3ayxB1 D:x,y,z->B:X,Y,Z Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Interaction Interface Pymol
e3ayxC1 D:x,y,z->C:-X,Y-1/2,-Z+1 all-beta domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3ayxC2 D:x,y,z->C:X-1,Y,Z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol