Domain ID e3bgfA1

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  • A: a+b three layers
  • X: Coronavirus spike protein receptor-binding domain
  • H: Coronavirus spike protein receptor-binding domain
  • T: Beta-coronavirus spike protein receptor-binding domain
  • F: bCoV_S1_RBD
UID: 000353142
Type: Automatic domain
Parent: e2ghvC1
Range: A:323-502
PDB: 3bgf
PDB Description: Spike protein S1
UniProt: P59594
Species:

Structure of domain e3bgfA1

Domains in the same chain:

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e3bgfA1 A:323-502 Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain Beta-coronavirus spike protein receptor-binding domain

Domains in the same PDB:

e3bgfA1 A:323-502 Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain Beta-coronavirus spike protein receptor-binding domain
e3bgfB1 B:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3bgfB2 B:114-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3bgfC1 C:1-108 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3bgfC2 C:109-211 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3bgfH1 H:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3bgfH2 H:114-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3bgfL1 L:1-108 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3bgfL2 L:109-212 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3bgfS1 S:323-501 Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain Beta-coronavirus spike protein receptor-binding domain

Structural contacts of domain e3bgfA1 of H-group "Coronavirus spike protein receptor-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3bgfS1 A:X,Y,Z->S:x,y,z Coronavirus spike protein receptor-binding domain Interaction Interface Pymol
e3bgfB1 A:X,Y,Z->B:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3bgfS1 A:x,y,z->S:X,Y-1,Z Coronavirus spike protein receptor-binding domain Interaction Interface Pymol
e3bgfL1 A:x,y,z->L:-X+1/2,Y-1/2,-Z+1 Immunoglobulin-related Interaction Interface Pymol
e3bgfC1 A:X,Y,Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol