Domain ID e3cc421

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  • A: extended segments
  • X: Ribosomal protein L39e
  • H: Ribosomal protein L39e
  • T: Ribosomal protein L39e
  • F: Ribosomal_L39
UID: 000060782
Type: Automatic domain
Parent: e1vqo21
Range: 2:1-49
Ligands: CL NA SR
PDB: 3cc4
PDB Description: 50S ribosomal protein L39e
UniProt: P22452
Species: Haloarcula marismortui

Structure of domain e3cc421

Domains in the same chain:

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e3cc421 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e

Domains in the same PDB:

e3cc411 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cc421 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e3cc431 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cc4A1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3cc4A2 A:91-237 SH3 SH3 SH3
e3cc4B1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e3cc4C1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3cc4D1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3cc4E1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cc4E2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cc4F1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e3cc4G1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3cc4H1 H:4-166 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3cc4I1 I:66-129 HTH HTH Ribosomal protein L11, C-terminal domain
e3cc4J1 J:4-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3cc4K1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3cc4L1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cc4M1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cc4N1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3cc4O1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cc4P1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e3cc4P2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e3cc4Q1 Q:1-95 SH3 SH3 SH3
e3cc4R1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3cc4S1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cc4T1 T:1-119 SH3 SH3 SH3
e3cc4U1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3cc4V1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3cc4W1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3cc4X1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3cc4Y1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e3cc4Z1 Z:35-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3cc421 of H-group "Ribosomal protein L39e":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3cc4S1 2:x,y,z->S:X,Y,Z Ribosomal proteins S24e, L23 and L15e Interaction Interface Pymol
e3cc411 2:x,y,z->1:X,Y,Z Rubredoxin-related Interaction Interface Pymol