Domain ID e3cceD1

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  • A: a+b two layers
  • X: Ribosomal protein L5
  • H: Ribosomal protein L5
  • T: Ribosomal protein L5
  • F: Ribosomal_L5,Ribosomal_L5_C
UID: 000342026
Type: Automatic domain
Parent: e1iq4A1
Range: D:10-174
Ligands: CL
PDB: 3cce
PDB Description: 50S ribosomal protein L5P
UniProt: P14124
Hsap BLAST neighbor: P62913
Species: Haloarcula marismortui

Structure of domain e3cceD1

Domains in the same chain:

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e3cceD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5

Domains in the same PDB:

e3cce11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cce21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e3cce31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cceA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3cceA2 A:91-237 SH3 SH3 SH3
e3cceB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e3cceC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3cceD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3cceE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cceE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cceF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e3cceG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3cceH1 H:4-166 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3cceI1 I:66-129 HTH HTH Ribosomal protein L11, C-terminal domain
e3cceJ1 J:4-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3cceK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3cceL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cceM1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cceN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3cceO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cceP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e3cceP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e3cceQ1 Q:1-95 SH3 SH3 SH3
e3cceR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3cceS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cceT1 T:1-119 SH3 SH3 SH3
e3cceU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3cceV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3cceW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3cceX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3cceY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e3cceZ1 Z:35-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3cceD1 of H-group "Ribosomal protein L5":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3cceN1 D:X,Y,Z->N:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3cceB1 D:x,y,z->B:-X+1/2,Y-1/2,-Z+1/2 RIFT-related Interaction Interface Pymol