Domain ID e3cclU1

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  • A: few secondary structure elements
  • X: Glucocorticoid receptor-like
  • H: LIM domain-like
  • T: LIM domain-like
  • F: Ribosomal_L24e
UID: 000342109
Type: Automatic domain
Parent: e1vqoU1
Range: U:4-56
Ligands: CD
PDB: 3ccl
PDB Description: 50S ribosomal protein L24e
UniProt: P14116
Species: Haloarcula marismortui

Structure of domain e3cclU1

Domains in the same chain:

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e3cclU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like

Domains in the same PDB:

e3ccl11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3ccl21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e3ccl31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cclA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3cclA2 A:91-237 SH3 SH3 SH3
e3cclB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e3cclC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3cclD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3cclE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cclE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cclF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e3cclG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3cclH1 H:4-166 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3cclI1 I:66-129 HTH HTH Ribosomal protein L11, C-terminal domain
e3cclJ1 J:4-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3cclK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3cclL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cclM1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cclN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3cclO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cclP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e3cclP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e3cclQ1 Q:1-95 SH3 SH3 SH3
e3cclR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3cclS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cclT1 T:1-119 SH3 SH3 SH3
e3cclU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3cclV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3cclW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3cclX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3cclY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e3cclZ1 Z:35-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3cclU1 of H-group "LIM domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3cclK1 U:x,y,z->K:X,Y,Z Ribosomal protein L14-related Interaction Interface Pymol
e3cclB1 U:x,y,z->B:X,Y,Z RIFT-related Interaction Interface Pymol