ECOD: domain e3ccmJ1

Domain ID e3ccmJ1

A: a/b three-layered sandwiches
X: Ribosomal protein L13/L15p/L18e/L32e
H: Ribosomal protein L13 and L16-A
T: Ribosomal protein L13 and L16-A
F: Ribosomal_L13

UID:	000342129
Type:	Automatic domain
Parent:	e4v19N1
Range:	J:4-145
Ligands:	CL NA SR
PDB:	3ccm
PDB Description:	50S ribosomal protein L13P
UniProt:	P29198
Hsap BLAST neighbor:	P40429
Species:	Haloarcula marismortui

Domains in the same chain:

Download Pymol

e3ccmJ1	J:4-145	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L13 and L16-A	Ribosomal protein L13 and L16-A

Domains in the same PDB:

e3ccm11	1:1-56	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3ccm21	2:1-49	Ribosomal protein L39e	Ribosomal protein L39e	Ribosomal protein L39e
e3ccm31	3:1-92	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3ccmA1	A:1-90	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3ccmA2	A:91-237	SH3	SH3	SH3
e3ccmB1	B:1-337	cradle loop barrel	RIFT-related	Alanine racemase-C
e3ccmC1	C:1-246	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4
e3ccmD1	D:10-174	Ribosomal protein L5	Ribosomal protein L5	Ribosomal protein L5
e3ccmE1	E:1-79	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e3ccmE2	E:80-172	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e3ccmF1	F:1-119	Bacillus chorismate mutase-like	L30e-like	L30e-like
e3ccmG1	G:12-29,G:63-73	Alpha-beta plaits	Ribosomal protein L10-like	Ribosomal protein L10-like
e3ccmH1	H:4-166	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal protein L10e
e3ccmI1	I:66-129	HTH	HTH	Ribosomal protein L11, C-terminal domain
e3ccmJ1	J:4-145	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L13 and L16-A	Ribosomal protein L13 and L16-A
e3ccmK1	K:1-132	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e3ccmL1	L:1-150	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e3ccmM1	M:1-194	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e3ccmN1	N:1-186	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3ccmO1	O:1-115	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e3ccmP1	P:1-54	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain
e3ccmP2	P:55-142	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain
e3ccmQ1	Q:1-95	SH3	SH3	SH3
e3ccmR1	R:1-150	Enolase-N/ribosomal protein	Ribosomal protein L22	Ribosomal protein L22
e3ccmS1	S:1-81	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e3ccmT1	T:1-119	SH3	SH3	SH3
e3ccmU1	U:4-56	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e3ccmV1	V:1-65	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)
e3ccmW1	W:1-154	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e
e3ccmX1	X:7-88	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e3ccmY1	Y:95-236	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L32e	Ribosomal protein L32e
e3ccmZ1	Z:35-106	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Structural contacts of domain e3ccmJ1 of H-group "Ribosomal protein L13 and L16-A":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3ccmE1	J:x,y,z->E:X,Y,Z	Ribosomal protein L6	Interaction Interface Pymol
e3ccmB1	J:x,y,z->B:X,Y,Z	RIFT-related	Interaction Interface Pymol