Domain ID e3ccmJ1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L13/L15p/L18e/L32e
  • H: Ribosomal protein L13 and L16-A
  • T: Ribosomal protein L13 and L16-A
  • F: Ribosomal_L13
UID: 000342129
Type: Automatic domain
Parent: e4v19N1
Range: J:4-145
Ligands: CL NA SR
PDB: 3ccm
PDB Description: 50S ribosomal protein L13P
UniProt: P29198
Hsap BLAST neighbor: P40429
Species: Haloarcula marismortui

Structure of domain e3ccmJ1

Domains in the same chain:

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e3ccmJ1 J:4-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A

Domains in the same PDB:

e3ccm11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3ccm21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e3ccm31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3ccmA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3ccmA2 A:91-237 SH3 SH3 SH3
e3ccmB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e3ccmC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3ccmD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3ccmE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3ccmE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3ccmF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e3ccmG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3ccmH1 H:4-166 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3ccmI1 I:66-129 HTH HTH Ribosomal protein L11, C-terminal domain
e3ccmJ1 J:4-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3ccmK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3ccmL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3ccmM1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3ccmN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3ccmO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3ccmP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e3ccmP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e3ccmQ1 Q:1-95 SH3 SH3 SH3
e3ccmR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3ccmS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3ccmT1 T:1-119 SH3 SH3 SH3
e3ccmU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3ccmV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3ccmW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3ccmX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3ccmY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e3ccmZ1 Z:35-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3ccmJ1 of H-group "Ribosomal protein L13 and L16-A":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ccmE1 J:x,y,z->E:X,Y,Z Ribosomal protein L6 Interaction Interface Pymol
e3ccmB1 J:x,y,z->B:X,Y,Z RIFT-related Interaction Interface Pymol