Domain ID e3ccvC1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000342281
Type: Automatic domain
Parent: e1dmgA1
Range: C:1-246
Ligands: MG NA
PDB: 3ccv
PDB Description: 50S ribosomal protein L4P
UniProt: P12735
Hsap BLAST neighbor: P36578
Species: Haloarcula marismortui

Structure of domain e3ccvC1

Domains in the same chain:

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e3ccvC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e3ccv11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3ccv21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e3ccv31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3ccvA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3ccvA2 A:91-237 SH3 SH3 SH3
e3ccvB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e3ccvC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3ccvD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3ccvE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3ccvE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3ccvF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e3ccvG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3ccvH1 H:4-166 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3ccvI1 I:66-129 HTH HTH Ribosomal protein L11, C-terminal domain
e3ccvJ1 J:4-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3ccvK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3ccvL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3ccvM1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3ccvN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3ccvO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3ccvP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e3ccvP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e3ccvQ1 Q:1-95 SH3 SH3 SH3
e3ccvR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3ccvS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3ccvT1 T:1-119 SH3 SH3 SH3
e3ccvU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3ccvV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3ccvW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3ccvX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3ccvY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e3ccvZ1 Z:35-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3ccvC1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ccvO1 C:X,Y,Z->O:x,y,z Ribosomal proteins L15p and L18e Interaction Interface Pymol
e3ccv11 C:X,Y,Z->1:x,y,z Rubredoxin-related Interaction Interface Pymol
e3ccvT1 C:X,Y,Z->T:x,y,z SH3 Interaction Interface Pymol