Domain ID e3cd6S1

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Ribosomal proteins S24e, L23 and L15e
  • T: Ribosomal proteins S24e, L23 and L15e
  • F: Ribosomal_L23
UID: 000064057
Type: Automatic domain
Parent: e1vqoS1
Range: S:1-81
Ligands: MG NA SR
PDB: 3cd6
PDB Description: 50S ribosomal protein L23P
UniProt: P12732
Hsap BLAST neighbor: P62750
Species: Haloarcula marismortui

Structure of domain e3cd6S1

Domains in the same chain:

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e3cd6S1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e

Domains in the same PDB:

e3cd611 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cd621 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e3cd631 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cd6A1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3cd6A2 A:91-237 SH3 SH3 SH3
e3cd6B1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e3cd6C1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3cd6D1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3cd6E1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cd6E2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cd6F1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e3cd6G1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3cd6H1 H:4-166 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3cd6I1 I:66-129 HTH HTH Ribosomal protein L11, C-terminal domain
e3cd6J1 J:4-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3cd6K1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3cd6L1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cd6M1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cd6N1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3cd6O1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cd6P1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e3cd6P2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e3cd6Q1 Q:1-95 SH3 SH3 SH3
e3cd6R1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3cd6S1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cd6T1 T:1-119 SH3 SH3 SH3
e3cd6U1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3cd6V1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3cd6W1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3cd6X1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3cd6Y1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e3cd6Z1 Z:35-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3cd6S1 of H-group "Ribosomal proteins S24e, L23 and L15e":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3cd6V1 S:X,Y,Z->V:x,y,z Ribosomal protein L29 (L29p) Interaction Interface Pymol
e3cd621 S:X,Y,Z->2:x,y,z Ribosomal protein L39e Interaction Interface Pymol