ECOD: domain e3cd6S1

Domain ID e3cd6S1

A: a+b two layers
X: Alpha-beta plaits
H: Ribosomal proteins S24e, L23 and L15e
T: Ribosomal proteins S24e, L23 and L15e
F: Ribosomal_L23

UID:	000064057
Type:	Automatic domain
Parent:	e1vqoS1
Range:	S:1-81
Ligands:	MG NA SR
PDB:	3cd6
PDB Description:	50S ribosomal protein L23P
UniProt:	P12732
Hsap BLAST neighbor:	P62750
Species:	Haloarcula marismortui

Domains in the same chain:

Download Pymol

e3cd6S1	S:1-81	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e

Domains in the same PDB:

e3cd611	1:1-56	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3cd621	2:1-49	Ribosomal protein L39e	Ribosomal protein L39e	Ribosomal protein L39e
e3cd631	3:1-92	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3cd6A1	A:1-90	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3cd6A2	A:91-237	SH3	SH3	SH3
e3cd6B1	B:1-337	cradle loop barrel	RIFT-related	Alanine racemase-C
e3cd6C1	C:1-246	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4
e3cd6D1	D:10-174	Ribosomal protein L5	Ribosomal protein L5	Ribosomal protein L5
e3cd6E1	E:1-79	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e3cd6E2	E:80-172	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e3cd6F1	F:1-119	Bacillus chorismate mutase-like	L30e-like	L30e-like
e3cd6G1	G:12-29,G:63-73	Alpha-beta plaits	Ribosomal protein L10-like	Ribosomal protein L10-like
e3cd6H1	H:4-166	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal protein L10e
e3cd6I1	I:66-129	HTH	HTH	Ribosomal protein L11, C-terminal domain
e3cd6J1	J:4-145	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L13 and L16-A	Ribosomal protein L13 and L16-A
e3cd6K1	K:1-132	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e3cd6L1	L:1-150	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e3cd6M1	M:1-194	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e3cd6N1	N:1-186	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3cd6O1	O:1-115	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e3cd6P1	P:1-54	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain
e3cd6P2	P:55-142	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain
e3cd6Q1	Q:1-95	SH3	SH3	SH3
e3cd6R1	R:1-150	Enolase-N/ribosomal protein	Ribosomal protein L22	Ribosomal protein L22
e3cd6S1	S:1-81	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e3cd6T1	T:1-119	SH3	SH3	SH3
e3cd6U1	U:4-56	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e3cd6V1	V:1-65	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)
e3cd6W1	W:1-154	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e
e3cd6X1	X:7-88	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e3cd6Y1	Y:95-236	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L32e	Ribosomal protein L32e
e3cd6Z1	Z:35-106	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Structural contacts of domain e3cd6S1 of H-group "Ribosomal proteins S24e, L23 and L15e":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3cd6V1	S:X,Y,Z->V:x,y,z	Ribosomal protein L29 (L29p)	Interaction Interface Pymol
e3cd621	S:X,Y,Z->2:x,y,z	Ribosomal protein L39e	Interaction Interface Pymol