Domain ID e3cf5Y1

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L32p
UID: 000088922
Type: Automatic domain
Parent: e2j0151
Range: Y:2-59
PDB: 3cf5
PDB Description: 50S RIBOSOMAL PROTEIN L32
UniProt: P49228
Species: Deinococcus radiodurans

Structure of domain e3cf5Y1

Domains in the same chain:

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e3cf5Y1 Y:2-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e3cf511 1:5-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cf521 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3cf531 3:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3cf541 4:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3cf5A1 A:61-127 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3cf5A2 A:128-272 SH3 SH3 SH3
e3cf5B1 B:1-205 cradle loop barrel RIFT-related Alanine racemase-C
e3cf5C1 C:2-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3cf5D1 D:3-179 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3cf5E1 E:8-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cf5E2 E:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cf5F2 F:1-70 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3cf5F1 F:72-137 HTH HTH Ribosomal protein L11, C-terminal domain
e3cf5G1 G:30-166 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3cf5H1 H:1-134 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3cf5I1 I:4-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cf5J1 J:6-141 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3cf5K1 K:14-115 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3cf5L1 L:8-111 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3cf5M1 M:2-109 SH3 SH3 SH3
e3cf5N1 N:3-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3cf5O1 O:5-98 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3cf5P1 P:22-134 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3cf5Q1 Q:2-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cf5R2 R:4-113 SH3 SH3 SH3
e3cf5S1 S:1-88 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3cf5S2 S:89-175 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e3cf5T1 T:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3cf5U1 U:8-79 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3cf5V1 V:1-66 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3cf5W1 W:1-55 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3cf5Y1 Y:2-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3cf5Y1 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3cf5P1 Y:x,y,z->P:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol
e3cf5K1 Y:x,y,z->K:X,Y,Z Prokaryotic ribosomal protein L17 Interaction Interface Pymol
e3cf5K1 Y:x,y,z->M:X-1/2,-Y+1/2,-Z+1/2 Prokaryotic ribosomal protein L17 Interaction Interface Pymol
e3cf5H1 Y:x,y,z->H:X-1/2,-Y+1/2,-Z+1/2 Ribosomal protein L14-related Interaction Interface Pymol