Domain ID e3cmeD1

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  • A: a+b two layers
  • X: Ribosomal protein L5
  • H: Ribosomal protein L5
  • T: Ribosomal protein L5
  • F: Ribosomal_L5,Ribosomal_L5_C
UID: 000348543
Type: Automatic domain
Parent: e1iq4A1
Range: D:10-174
Ligands: CL NA PHE
PDB: 3cme
PDB Description: 50S ribosomal protein L5P
UniProt: P14124
Hsap BLAST neighbor: P62913
Species: Haloarcula marismortui

Structure of domain e3cmeD1

Domains in the same chain:

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e3cmeD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5

Domains in the same PDB:

e3cme11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cme21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e3cme31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cmeA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3cmeA2 A:91-237 SH3 SH3 SH3
e3cmeB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e3cmeC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3cmeD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3cmeE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cmeE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cmeF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e3cmeG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3cmeH1 H:4-166 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3cmeI1 I:66-129 HTH HTH Ribosomal protein L11, C-terminal domain
e3cmeJ1 J:4-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3cmeK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3cmeL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cmeM1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cmeN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3cmeO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cmeP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e3cmeP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e3cmeQ1 Q:1-95 SH3 SH3 SH3
e3cmeR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3cmeS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cmeT1 T:1-119 SH3 SH3 SH3
e3cmeU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3cmeV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3cmeW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3cmeX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3cmeY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e3cmeZ1 Z:35-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3cmeD1 of H-group "Ribosomal protein L5":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3cmeN1 D:X,Y,Z->N:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3cmeB1 D:x,y,z->B:-X+1/2,Y-1/2,-Z+1/2 RIFT-related Interaction Interface Pymol