Domain ID e3cp8A9

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: FAD/NAD(P)-binding domain
  • F: GIDA
UID: 001164923
Type: Automatic domain
Parent: e3g5qA1
Range: A:0-194,A:325-439
Ligands: FAD
PDB: 3cp8
PDB Description: TRNA URIDINE 5-CARBOXYMETHYLAMINOMETHYL MODIFICATION ENZYME GIDA
UniProt: Q8KA85
Hsap BLAST neighbor: Q9Y2Z2
Species:

Structure of domain e3cp8A9

Domains in the same chain:

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e3cp8A9 A:0-194,A:325-439 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3cp8A10 A:195-324 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e3cp8A11 A:440-543 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA
e3cp8A8 A:544-619 HhH/H2TH SAM/DNA-glycosylase SAM domain-like

Domains in the same PDB:

e3cp8A9 A:0-194,A:325-439 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3cp8A10 A:195-324 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e3cp8A11 A:440-543 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA
e3cp8A8 A:544-619 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3cp8B9 B:0-194,B:325-439 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3cp8B10 B:195-324 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e3cp8B11 B:440-543 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA
e3cp8B8 B:544-619 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3cp8C9 C:0-194,C:325-439 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3cp8C10 C:195-324 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e3cp8C11 C:440-543 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA
e3cp8C8 C:544-619 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3cp8D3 D:0-196,D:327-439 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3cp8D2 D:195-326 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e3cp8D4 D:440-560 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA

Structural contacts of domain e3cp8A9 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3cp8B9 A:X,Y,Z->B:x,y,z Rossmann-related Interaction Interface Pymol
e3cp8B10 A:X,Y,Z->B:x,y,z FAD-linked reductases-C Interaction Interface Pymol
e3cp8B11 A:x,y,z->B:-X,Y-1/2,-Z C-terminal helical domain in tRNA modifying enzyme GidA Interaction Interface Pymol
e3cp8C11 A:x,y,z->C:-X+1,Y-1/2,-Z+1 C-terminal helical domain in tRNA modifying enzyme GidA Interaction Interface Pymol
e3cp8A10 A:X,Y-1,Z->A:x,y,z FAD-linked reductases-C Interaction Interface Pymol
e3cp8A10 A:X,Y,Z->D:x,y,z FAD-linked reductases-C Interaction Interface Pymol