Domain ID e3cpwD1

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  • A: a+b two layers
  • X: Ribosomal protein L5
  • H: Ribosomal protein L5
  • T: Ribosomal protein L5
  • F: Ribosomal_L5,Ribosomal_L5_C
UID: 000345368
Type: Automatic domain
Parent: e1iq4A1
Range: D:10-174
Ligands: CL
PDB: 3cpw
PDB Description: 50S ribosomal protein L5P
UniProt: P14124
Hsap BLAST neighbor: P62913
Species: Haloarcula marismortui

Structure of domain e3cpwD1

Domains in the same chain:

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e3cpwD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5

Domains in the same PDB:

e3cpw11 1:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e3cpw21 2:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cpwB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e3cpwC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3cpwD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3cpwE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cpwE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3cpwF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e3cpwG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3cpwH1 H:1-163 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3cpwI1 I:4-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3cpwJ1 J:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3cpwK1 K:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cpwL1 L:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cpwM1 M:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3cpwN1 N:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3cpwO1 O:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e3cpwO2 O:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e3cpwP1 P:1-95 SH3 SH3 SH3
e3cpwQ1 Q:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3cpwR1 R:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3cpwS1 S:1-119 SH3 SH3 SH3
e3cpwT1 T:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3cpwU1 U:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3cpwV1 V:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3cpwW1 W:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3cpwX1 X:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e3cpwY1 Y:11-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cpwZ1 Z:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3cpwD1 of H-group "Ribosomal protein L5":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3cpwM1 D:X,Y,Z->M:x,y,z Ribonuclease H-like Interaction Interface Pymol