Domain ID e3cx5B1

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  • A: a+b two layers
  • X: LuxS, MPP, ThrRS/AlaRS common domain
  • H: LuxS, MPP, ThrRS/AlaRS common domain
  • T: LuxS/MPP-like metallohydrolase
  • F: Peptidase_M16
UID: 000005503
Type: Manual and representative domain
Range: B:17-218
PDB: 3cx5
PDB Description: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL
UniProt: P07257
Hsap BLAST neighbor: P22695
Species:

Structure of domain e3cx5B1

Domains in the same chain:

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e3cx5B1 B:17-218 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3cx5B2 B:219-368 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase

Domains in the same PDB:

e3cx5A1 A:27-239 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3cx5A2 A:240-457 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3cx5B1 B:17-218 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3cx5B2 B:219-368 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3cx5C2 C:14-261 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e3cx5C1 C:262-380 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3cx5D1 D:65-260 Cytochrome c-like Cytochrome c Cytochrome c
e3cx5D2 D:261-306 cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor
e3cx5E2 E:31-86 iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor
e3cx5E1 E:90-156,E:199-214 ISP domain ISP domain ISP domain
e3cx5E3 E:157-198 Trm112p-like Trm112p-like Trm112p-like
e3cx5F1 F:74-147 cytochrome bc1 complex 11 kDa protein-like Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3cx5G1 G:3-127 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3cx5H1 H:2-94 Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3cx5I1 I:4-58 Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3cx5J1 J:1-122 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3cx5K1 K:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3cx5L1 L:27-239 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3cx5L2 L:240-457 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3cx5M1 M:17-218 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3cx5M2 M:219-368 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3cx5N2 N:14-261 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e3cx5N1 N:262-380 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3cx5O1 O:65-260 Cytochrome c-like Cytochrome c Cytochrome c
e3cx5O2 O:261-306 cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor
e3cx5P2 P:31-86 iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor
e3cx5P1 P:90-156,P:199-214 ISP domain ISP domain ISP domain
e3cx5P3 P:157-198 Trm112p-like Trm112p-like Trm112p-like
e3cx5Q1 Q:74-147 cytochrome bc1 complex 11 kDa protein-like Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3cx5R1 R:3-127 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3cx5S1 S:2-94 Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3cx5T1 T:4-58 Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3cx5U1 U:1-122 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3cx5V1 V:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3cx5W1 W:1-108 Cytochrome c-like Cytochrome c Cytochrome c

Structural contacts of domain e3cx5B1 of H-group "LuxS, MPP, ThrRS/AlaRS common domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3cx5A2 B:x,y,z->A:X,Y,Z LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e3cx5A1 B:x,y,z->A:X,Y,Z LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e3cx5M2 B:X,Y,Z->M:x,y,z LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e3cx5R1 B:X,Y,Z->R:x,y,z 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Interaction Interface Pymol