ECOD: domain e3d4rA1

Domain ID e3d4rA1

A: a+b complex topology
X: alpha/beta-Hammerhead/Barrel-sandwich hybrid
H: alpha/beta-Hammerhead/Barrel-sandwich hybrid
T: Single hybrid motif
F: DUF2118

UID:	000185145
Type:	Manual and representative domain
Range:	A:83-150
Ligands:	EDO
PDB:	3d4r
PDB Description:	Domain of Unknown Function from the Pfam-B_34464 Family
UniProt:	Q6M171
Species:	Methanococcus maripaludis

Domains in the same chain:

Download Pymol

e3d4rA2	A:1-82	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family
e3d4rA1	A:83-150	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif

Domains in the same PDB:

e3d4rA2	A:1-82	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family
e3d4rA1	A:83-150	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e3d4rB2	B:-6-82	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family
e3d4rB1	B:83-150	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e3d4rC2	C:-7-82	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family
e3d4rC1	C:83-150	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e3d4rD2	D:-7-82	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family
e3d4rD1	D:83-150	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e3d4rE2	E:-2-82	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family
e3d4rE1	E:83-150	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e3d4rF2	F:-7-82	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family	N-terminal domain in DUF2118 family
e3d4rF1	F:83-150	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif

Structural contacts of domain e3d4rA1 of H-group "alpha/beta-Hammerhead/Barrel-sandwich hybrid":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3d4rB2	A:X,Y,Z->B:x,y,z	N-terminal domain in DUF2118 family	Interaction Interface Pymol
e3d4rB1	A:X,Y,Z->B:x,y,z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e3d4rC2	A:-X+1,Y-1/2,-Z+1/2->C:x,y,z	N-terminal domain in DUF2118 family	Interaction Interface Pymol
e3d4rC1	A:-X+1,Y-1/2,-Z+1/2->C:x,y,z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e3d4rB2	A:X-1/2,-Y+1/2,-Z+1->B:x,y,z	N-terminal domain in DUF2118 family	Interaction Interface Pymol
e3d4rE1	A:X,Y,Z->E:x,y,z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e3d4rC2	A:X,Y,Z->C:x,y,z	N-terminal domain in DUF2118 family	Interaction Interface Pymol